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3 Critical S-Corp Tax Rules Every Business Owner Must Handle Before Year-End

Written by Shakh Kadirov | Dec 9, 2025 10:42:29 PM
 
 
 

Running an S-Corporation comes with incredible tax advantages — but only if you follow the rules correctly. As we head toward year-end, it’s essential for S-Corp owners to review a few key areas that the IRS pays close attention to. These rules are simple on the surface, but mistakes can lead to payroll issues, lost deductions, amended returns, or even penalties.

Below is a clear, strategic breakdown of the three most important S-Corp tax rules every owner must understand — and act on — before December 31.

1. Health Insurance for 2%+ Shareholders Must Be Reported Properly

If you own more than 2% of your S-Corp (most small-business owners do) and your S corp pays for health insurance premiums, the IRS requires that the cost of your health insurance be included in your W-2.

This is one of the most commonly missed compliance items, and the consequences can be expensive.

 

  • Those premiums must be added to your W-2 as wages (usually not subject to Social Security or Medicare tax).

  • You may be eligible to claim the Self-Employed Health Insurance Deduction on your personal tax return.

Why It Matters

If the insurance isn’t correctly reported:

  • You may lose the deduction entirely

  • You risk IRS adjustments during an audit

  • Payroll filings may need to be amended

This is one of the simplest year-end tasks — but extremely valuable when done right.

2. You Must Pay Yourself a “Reasonable Salary”

The IRS requires all S-Corp owner-employees to take a reasonable salary before taking distributions.

This single rule is one of the biggest IRS audit triggers for S-Corps.

What Counts as “Reasonable”?

There’s no universal number, but key factors include:

  • Your role and responsibilities

  • Time spent working in the business

  • Industry and location

  • Comparable employee wages

If you're taking distributions but little (or no) payroll, the IRS sees that as avoiding payroll taxes — and they can reclassify distributions as wages.

Why It Matters

  • Failure to pay a reasonable salary can result in back taxes, penalties, and interest

  • Your distributions may be reclassified as payroll

  • You may lose certain deductions tied to payroll

If you haven't run payroll this year — or your salary is unrealistically low — now is the time to fix it.

3. Hiring Family? Payroll Rules Still Apply

Many S-Corp owners hire spouses or children to help in the business — which is perfectly fine. But the IRS expects these positions to be legitimate and treated like any other employment relationship.

If You Hire Family Members:

  • You must run payroll and withhold taxes

  • Compensation must be reasonable based on the work performed

  • Payroll records, job descriptions, and hours worked should be documented

The IRS knows S-Corps often use family employment to shift income — which is why this area gets increased scrutiny.

What to Avoid

  • Paying large sums to family members with no real job duties

  • Using payroll to shift income into lower tax brackets

  • Paying minors in ways that don’t match their actual skills or contributions

Done correctly, hiring family can be a smart tax strategy. Done incorrectly, it can create red flags.

Year-End Checklist for S-Corp Owners

Here’s a quick summary to ensure you’re ready before December 31:

  • Update your payroll to include shareholder health insurance
  • Confirm you’ve paid yourself a reasonable salary
  • Review payroll for spouses, children, or family employees
  • Ensure health premium reimbursements are documented properly
  • Run final payroll adjustments if needed

Why Year-End Compliance Matters

S-Corps are among the most tax-efficient business structures, but these benefits rely on strict compliance with IRS rules. Missing one of these steps can:

  • Reduce deductions

  • Create audit exposure

  • Trigger payroll amendments

  • Lead to costly penalties

The good news? With proactive planning, these issues are entirely avoidable.

Need Help Closing Out Your S-Corp Correctly?

KFM specializes in accounting, tax compliance, and year-end planning for small and medium-sized business owners. If you want clarity and confidence heading into tax season, we can help.

📅 Schedule a tax strategy session with KFM

 

 

 

 

 

 


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